Chemical Components in the PDB

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OMU : Summary

Code

OMU

One-letter code

U

Molecule name

O2'-METHYLURIDINE 5'-MONOPHOSPHATE

Systematic names

ProgramVersionName
ACDLabs 10.04 2'-O-methyluridine 5'-(dihydrogen phosphate)
OpenEye OEToolkits 1.5.0 [(2R,3R,4R,5R)-5-(2,4-dioxopyrimidin-1-yl)-3-hydroxy-4-methoxy-oxolan-2-yl]methyl dihydrogen phosphate

Formula

C10 H15 N2 O9 P

Formal charge

0

Molecular weight

338.208 Da

SMILES

TypeProgramVersionDescriptor
SMILES ACDLabs 10.04 O=C1NC(=O)N(C=C1)C2OC(C(O)C2OC)COP(=O)(O)O
SMILES CACTVS 3.341 CO[CH]1[CH](O)[CH](CO[P](O)(O)=O)O[CH]1N2C=CC(=O)NC2=O
SMILES OpenEye OEToolkits 1.5.0 COC1C(C(OC1N2C=CC(=O)NC2=O)COP(=O)(O)O)O
Canonical SMILES CACTVS 3.341 CO[C@@H]1[C@H](O)[C@@H](CO[P](O)(O)=O)O[C@H]1N2C=CC(=O)NC2=O
Canonical SMILES OpenEye OEToolkits 1.5.0 CO[C@@H]1[C@@H]([C@H](O[C@H]1N2C=CC(=O)NC2=O)COP(=O)(O)O)O

IUPAC InChI

InChI=1S/C10H15N2O9P/c1-19-8-7(14)5(4-20-22(16,17)18)21-9(8)12-3-2-6(13)11-10(12)15/h2-3,5,7-9,14H,4H2,1H3,(H,11,13,15)(H2,16,17,18)/t5-,7-,8-,9-/m1/s1

IUPAC InChI key

FHMMECZNEPGJSJ-ZOQUXTDFSA-N
OMU

wwPDB Information

Atom count

37 (22 without Hydrogen)

Polymer type

Ribonucleotide

Type description

RNA LINKING

Type code

ATOMN

Is modified

Yes

Standard parent

U

Defined at

1999-07-08

Last modified at

2011-06-04

Status

Released

Obsoleted

Not Assigned