Chemical Components in the PDB

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U2P : Summary

Code

U2P

One-letter code

U

Molecule name

PHOSPHORIC ACID MONO-[2-(2,4-DIOXO-3,4-DIHYDRO-2H-PYRIMIDIN-1-YL)-4-HYDROXY-5-HYDROXYMETHYL-TETRAHYDRO-FURAN-3-YL] ESTER

Synonyms

URIDINE-2'-PHOSPHATE
2'-URIDINEMONOPHOSPHATE

Systematic names

ProgramVersionName
ACDLabs 10.04 2'-uridylic acid
OpenEye OEToolkits 1.5.0 [(2R,3R,4R,5R)-2-(2,4-dioxopyrimidin-1-yl)-4-hydroxy-5-(hydroxymethyl)oxolan-3-yl] dihydrogen phosphate

Formula

C9 H13 N2 O9 P

Formal charge

0

Molecular weight

324.181 Da

SMILES

TypeProgramVersionDescriptor
SMILES ACDLabs 10.04 O=C1NC(=O)N(C=C1)C2OC(C(O)C2OP(=O)(O)O)CO
SMILES CACTVS 3.341 OC[CH]1O[CH]([CH](O[P](O)(O)=O)[CH]1O)N2C=CC(=O)NC2=O
SMILES OpenEye OEToolkits 1.5.0 C1=CN(C(=O)NC1=O)C2C(C(C(O2)CO)O)OP(=O)(O)O
Canonical SMILES CACTVS 3.341 OC[C@H]1O[C@H]([C@H](O[P](O)(O)=O)[C@@H]1O)N2C=CC(=O)NC2=O
Canonical SMILES OpenEye OEToolkits 1.5.0 C1=CN(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)CO)O)OP(=O)(O)O

IUPAC InChI

InChI=1S/C9H13N2O9P/c12-3-4-6(14)7(20-21(16,17)18)8(19-4)11-2-1-5(13)10-9(11)15/h1-2,4,6-8,12,14H,3H2,(H,10,13,15)(H2,16,17,18)/t4-,6-,7-,8-/m1/s1

IUPAC InChI key

HQIDPEYTETUCNF-XVFCMESISA-N
U2P

wwPDB Information

Atom count

34 (21 without Hydrogen)

Polymer type

Bound ligand

Type description

RNA LINKING

Type code

ATOMN

Is modified

Yes

Standard parent

U

Defined at

2003-02-26

Last modified at

2020-06-17

Status

Released

Obsoleted

Not Assigned