CryoEM structure of nucleotide-free form of the nitrogenase iron protein from A. vinelandii
Resolution: 2.57 Å
EM Method: Single-particle
Fitted PDBs: 8tc3
Q-score: 0.644
Warmack RA, Wenke BB, Spatzal T, Rees DC
Nat Protoc (2024) [ Pubmed: 38575747 DOI: doi:10.1038/s41596-024-00973-5 ]
- Homodimeric nitrogenase fe-protein (114 kDa, Complex from Azotobacter vinelandii DJ)
- Iron/sulfur cluster (351 Da, Ligand)
- Nitrogenase iron protein,fluorescent protein plum (57 kDa, Protein from Discosoma sp. LW-2004)
- Water (18 Da, Ligand)
State 1 Yeast V-ATPase with Oxr1p bound
EMBO Rep (2024) [ Pubmed: 38565737 DOI: doi:10.1038/s44319-024-00126-5 ]
State 2 Yeast V-ATPase without Oxr1p bound
EMBO Rep (2024) [ Pubmed: 38565737 DOI: doi:10.1038/s44319-024-00126-5 ]
cryo-EM 3D maps of the S. cerevisiae Yta7 bound to ATPgS and histone H3 tail
Structure of the 55LCC ATPase complex
Resolution: 4.5 Å
EM Method: Single-particle
Fitted PDBs: 8rhn
Q-score: 0.361
Krishnamoorthy V, Foglizzo M, Dilley RL, Wu A, Datta A, Dutta P, Campbell LJ, Degtjarik O, Musgrove LJ, Calabrese AN, Zeqiraj E, Greenberg RA
Cell (2024) [ Pubmed: 38554706 DOI: doi:10.1016/j.cell.2024.03.002 ]
- Structure of the 55lcc atpase complex (649 kDa, Complex from Homo sapiens)
- Cdna flj55172 (29 kDa, Protein from Homo sapiens)
- Atpase family gene 2 protein homolog b (83 kDa, Protein from Homo sapiens)
- Cyclin-dependent kinase 2-interacting protein (27 kDa, Protein from Homo sapiens)
- Atpase family gene 2 protein homolog a (101 kDa, Protein from Homo sapiens)
Cryo-EM structure of native H. thermoluteolus TH-1 GroEL
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 8wu4
Q-score: 0.44
Liao Z, Gopalasingam CC, Kameya M, Gerle C, Shigematsu H, Ishii M, Arakawa T, Fushinobu S
Structure (2024) [ DOI: doi:10.1016/j.str.2024.02.012 Pubmed: 38492570 ]
- Chaperonin groel (55 kDa, Protein from Hydrogenophilus thermoluteolus)
- Native h. thermoluteolus groel (809 MDa, Complex from Hydrogenophilus thermoluteolus)
Cryo-EM structure of H. thermoluteolus GroEL-GroES2 football complex
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 8wuc
Q-score: 0.554
Liao Z, Gopalasingam CC, Kameya M, Gerle C, Shigematsu H, Ishii M, Arakawa T, Fushinobu S
Structure (2024) [ DOI: doi:10.1016/j.str.2024.02.012 Pubmed: 38492570 ]
- H. thermoluteolus groel (Complex)
- Chaperonin groel (56 kDa, Protein from Hydrogenophilus thermoluteolus)
- H. thermoluteolus groes (Complex)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Co-chaperonin groes (10 kDa, Protein from Hydrogenophilus thermoluteolus)
- Magnesium ion (24 Da, Ligand)
- H. thermoluteolus groel-groes2 football complex bound with adp-mg2+ (73 MDa, Complex from Hydrogenophilus thermoluteolus)
Cryo-EM structure of H. thermophilus GroEL-GroES2 asymmetric football complex
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 8wuw
Q-score: 0.444
Liao Z, Gopalasingam CC, Kameya M, Gerle C, Shigematsu H, Ishii M, Arakawa T, Fushinobu S
Structure (2024) [ DOI: doi:10.1016/j.str.2024.02.012 Pubmed: 38492570 ]
- Potassium ion (39 Da, Ligand)
- H. thermophilus groel-groes2 asymmetric football complex (Complex from Hydrogenobacter thermophilus TK-6)
- Chaperonin groel (Complex)
- Co-chaperonin groes (Complex)
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Co-chaperonin groes (10 kDa, Protein from Hydrogenobacter thermophilus TK-6)
- Chaperonin groel (56 kDa, Protein from Hydrogenobacter thermophilus TK-6)
Cryo-EM structure of H. thermophilus GroEL-GroES bullet complex
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 8wux
Q-score: 0.453
Liao Z, Gopalasingam CC, Kameya M, Gerle C, Shigematsu H, Ishii M, Arakawa T, Fushinobu S
Structure (2024) [ DOI: doi:10.1016/j.str.2024.02.012 Pubmed: 38492570 ]
- Co-chaperonin groes (10 kDa, Protein from Hydrogenobacter thermophilus TK-6)
- Potassium ion (39 Da, Ligand)
- H. thermophilus groel-groes bullet complex (Complex from Hydrogenobacter thermophilus TK-6)
- Chaperonin groel (Complex)
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Co-chaperonin groes (Complex)
- Chaperonin groel (56 kDa, Protein from Hydrogenobacter thermophilus TK-6)
E. coli clamp loader with closed clamp
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 8giy
Q-score: 0.185
To Be Published
- Zinc ion (65 Da, Ligand)
- Dna polymerase iii subunit tau (47 kDa, Protein from Escherichia coli K-12)
- Dna polymerase iii subunit delta (38 kDa, Protein from Escherichia coli K-12)
- Phosphothiophosphoric acid-adenylate ester (523 Da, Ligand)
- Dna polymerase iii subunit delta' (36 kDa, Protein from Escherichia coli K-12)
- Dna polymerase iii subunit psi (15 kDa, Protein from Escherichia coli K-12)
- Magnesium ion (24 Da, Ligand)
- E. coli clamp loader with closed clamp (331 kDa, Complex from Escherichia coli)
- Beta sliding clamp (40 kDa, Protein from Escherichia coli K-12)