Structure of the undecorated barbed end of F-actin.
Resolution: 3.08 Å
EM Method: Single-particle
Fitted PDBs: 8ru0
Q-score: 0.542
Oosterheert W, Boiero Sanders M, Funk J, Prumbaum D, Raunser S, Bieling P
Science (2024) 384 pp. eadn9560-eadn9560 [ Pubmed: 38603491 DOI: doi:10.1126/science.adn9560 ]
- Complex of the actin subunits that form the barbed end of actin filaments. (Complex from Oryctolagus cuniculus)
- Actin, alpha skeletal muscle (41 kDa, Protein from Oryctolagus cuniculus)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Actin filament (Complex)
- Phosphate ion (94 Da, Ligand)
Structure of the formin INF2 bound to the barbed end of F-actin.
Resolution: 3.41 Å
EM Method: Single-particle
Fitted PDBs: 8rv2
Q-score: 0.43
Oosterheert W, Boiero Sanders M, Funk J, Prumbaum D, Raunser S, Bieling P
Science (2024) 384 pp. eadn9560-eadn9560 [ Pubmed: 38603491 DOI: doi:10.1126/science.adn9560 ]
- Actin filament barbed end (Complex from Oryctolagus cuniculus)
- Actin, alpha skeletal muscle (41 kDa, Protein from Oryctolagus cuniculus)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Complex of the formin inf2 dimer that binds to the actin subunits at the barbed end of actin filaments. (Complex)
- Magnesium ion (24 Da, Ligand)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Inf2 dimer (Complex from Homo sapiens)
- Isoform 2 of inverted formin-2 (84 kDa, Protein from Homo sapiens)
- Phosphate ion (94 Da, Ligand)
Structure of Apo CXCR4/Gi complex
Resolution: 2.72 Å
EM Method: Single-particle
Fitted PDBs: 8u4n
Q-score: 0.56
Saotome K, McGoldrick LL, Ho J, Ramlall T, Shah S, Moore MJ, Kim JH, Leidich R, Olson WC, Franklin MC
bioRxiv (2024) [ DOI: doi:10.1101/2024.02.09.579708 ]
- Cholesterol (386 Da, Ligand)
- Guanine nucleotide-binding protein g(i) subunit alpha-1 (41 kDa, Protein from Homo sapiens)
- C-x-c chemokine receptor type 4 (71 kDa, Protein from Homo sapiens)
- Guanine nucleotide-binding protein g(i)/g(s)/g(o) subunit gamma-2 (7 kDa, Protein from Homo sapiens)
- Apo cxcr4/gi complex (Complex from Homo sapiens)
- Guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 (38 kDa, Protein from Homo sapiens)
Structure of CXCL12-bound CXCR4/Gi complex
Resolution: 3.29 Å
EM Method: Single-particle
Fitted PDBs: 8u4o
Q-score: 0.489
Saotome K, McGoldrick LL, Ho J, Ramlall T, Shah S, Moore MJ, Kim JH, Leidich R, Olson WC, Franklin MC
bioRxiv (2024) [ DOI: doi:10.1101/2024.02.09.579708 ]
- Cholesterol (386 Da, Ligand)
- Guanine nucleotide-binding protein g(i) subunit alpha-1 (41 kDa, Protein from Homo sapiens)
- C-x-c chemokine receptor type 4 (71 kDa, Protein from Homo sapiens)
- Stromal cell-derived factor 1 (7 kDa, Protein from Homo sapiens)
- Cxcl12-bound cxcr4/gi complex (Complex from Homo sapiens)
- Guanine nucleotide-binding protein g(i)/g(s)/g(o) subunit gamma-2 (7 kDa, Protein from Homo sapiens)
- Guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 (38 kDa, Protein from Homo sapiens)
Structure of AMD3100-bound CXCR4/Gi complex
Resolution: 3.15 Å
EM Method: Single-particle
Fitted PDBs: 8u4p
Q-score: 0.532
Saotome K, McGoldrick LL, Ho J, Ramlall T, Shah S, Moore MJ, Kim JH, Leidich R, Olson WC, Franklin MC
bioRxiv (2024) [ DOI: doi:10.1101/2024.02.09.579708 ]
- Cholesterol (386 Da, Ligand)
- Guanine nucleotide-binding protein g(i) subunit alpha-1 (41 kDa, Protein from Homo sapiens)
- C-x-c chemokine receptor type 4 (71 kDa, Protein from Homo sapiens)
- Plerixafor (502 Da, Ligand)
- Guanine nucleotide-binding protein g(i)/g(s)/g(o) subunit gamma-2 (7 kDa, Protein from Homo sapiens)
- Amd3100-bound cxcr4/gi complex (Complex from Homo sapiens)
- Guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 (38 kDa, Protein from Homo sapiens)
Structure of REGN7663 Fab-bound CXCR4/Gi complex
Resolution: 3.36 Å
EM Method: Single-particle
Fitted PDBs: 8u4q
Q-score: 0.487
Saotome K, McGoldrick LL, Ho J, Ramlall T, Shah S, Moore MJ, Kim JH, Leidich R, Olson WC, Franklin MC
bioRxiv (2024) [ DOI: doi:10.1101/2024.02.09.579708 ]
- Cholesterol (386 Da, Ligand)
- Guanine nucleotide-binding protein g(i) subunit alpha-1 (41 kDa, Protein from Homo sapiens)
- C-x-c chemokine receptor type 4 (71 kDa, Protein from Homo sapiens)
- Regn7663 fab light chain (24 kDa, Protein from Homo sapiens)
- Guanine nucleotide-binding protein g(i)/g(s)/g(o) subunit gamma-2 (7 kDa, Protein from Homo sapiens)
- Regn7663 fab-bound cxcr4/gi complex (Complex from Homo sapiens)
- Guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 (38 kDa, Protein from Homo sapiens)
- Regn7663 fab heavy chain (25 kDa, Protein from Homo sapiens)
Structure of REGN7663-Fab bound CXCR4
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8u4r
Q-score: 0.554
Saotome K, McGoldrick LL, Ho J, Ramlall T, Shah S, Moore MJ, Kim JH, Leidich R, Olson WC, Franklin MC
bioRxiv (2024) [ DOI: doi:10.1101/2024.02.09.579708 ]
- Cholesterol (386 Da, Ligand)
- C-x-c chemokine receptor type 4 (71 kDa, Protein from Homo sapiens)
- Regn7663 fab light chain (24 kDa, Protein from Homo sapiens)
- Regn7663 fab-bound cxcr4 (Complex from Homo sapiens)
- Regn7663 fab heavy chain (25 kDa, Protein from Homo sapiens)
Structure of trimeric CXCR4 in complex with REGN7663 Fab
Resolution: 3.35 Å
EM Method: Single-particle
Fitted PDBs: 8u4s
Q-score: 0.49
Saotome K, McGoldrick LL, Ho J, Ramlall T, Shah S, Moore MJ, Kim JH, Leidich R, Olson WC, Franklin MC
bioRxiv (2024) [ DOI: doi:10.1101/2024.02.09.579708 ]
- Cholesterol (386 Da, Ligand)
- C-x-c chemokine receptor type 4 (71 kDa, Protein from Homo sapiens)
- (2r)-1-(hexadecanoyloxy)-3-(phosphonooxy)propan-2-yl (9z)-octadec-9-enoate (674 Da, Ligand)
- Trimeric cxcr4 in complex with regn7663 fab (Complex from Homo sapiens)
- Regn7663 fab light chain (24 kDa, Protein from Homo sapiens)
- Regn7663 fab heavy chain (25 kDa, Protein from Homo sapiens)
Structure of tetrameric CXCR4 in complex with REGN7663 Fab
Resolution: 3.38 Å
EM Method: Single-particle
Fitted PDBs: 8u4t
Q-score: 0.51
Saotome K, McGoldrick LL, Ho J, Ramlall T, Shah S, Moore MJ, Kim JH, Leidich R, Olson WC, Franklin MC
bioRxiv (2024) [ DOI: doi:10.1101/2024.02.09.579708 ]
- Cholesterol (386 Da, Ligand)
- C-x-c chemokine receptor type 4 (71 kDa, Protein from Homo sapiens)
- (2r)-1-(hexadecanoyloxy)-3-(phosphonooxy)propan-2-yl (9z)-octadec-9-enoate (674 Da, Ligand)
- Regn7663 fab light chain (24 kDa, Protein from Homo sapiens)
- Tetrameric cxcr4 in complex with regn7663 fab (Complex from Homo sapiens)
- Regn7663 fab heavy chain (25 kDa, Protein from Homo sapiens)
Resolution: 5.1 Å
EM Method: Single-particle
Fitted PDBs: 8uww
Q-score: 0.158
Risi CM, Belknap B, Atherton J, Coscarella IL, White HD, Bryant Chase P, Pinto JR, Galkin VE
J Mol Biol (2024) 436 pp. 168498-168498 [ Pubmed: 38387550 DOI: doi:10.1016/j.jmb.2024.168498 ]
- Thin filament troponin core complex (Complex from Sus scrofa)
- Troponin c, slow skeletal and cardiac muscles (18 kDa, Protein from Sus scrofa)
- Troponin i, cardiac muscle (24 kDa, Protein from Sus scrofa)
- Actin, alpha cardiac muscle 1 (42 kDa, Protein from Sus scrofa)
- Tropomyosin alpha-1 chain (32 kDa, Protein from Sus scrofa)
- Troponin t2, cardiac type (33 kDa, Protein from Sus scrofa)